... last final exam at 10:00 am on May 16, I wasted no time
boarding my flight to England later that afternoon. Having
spent three years living in a small village near the English
city of Bristol while I growing up, I had a rough idea of
the cultural differences that lie in store for me when I
reached Cambridge-my home for the summer.
For the first six weeks, I lived in a dorm
room at Fitzwilliam
College. At Cambridge, the University is only responsible
for a student's academic needs. Everything else-eating, sleeping
and social networking-is function of the individual colleges
(there are thirty-one in all). Fitzwilliam College-or Fitz,
for short-is a relatively new college, having only been established
in the 1960's and takes pride in the high percentage of public-school
educated students that it accepts every year. The university
as a whole enrolls a large number of privately educated students
in comparison to public school educated students-which over
the years have reinforced the economic disparity between
the students and faculty associated with the university and
the citizens of Cambridge.
One of the things I most enjoyed about Cambridge was being
able to walk everywhere. Even though Fitz was about a mile-and-a-half
north of the city center, when the weather permitted, I made
the half-an-hour journey to the lab everyday by foot. Passing
over the river Cam and into the town center past centuries
old houses crowding the narrow streets dotted with the infamous
and historical colleges of
Cambridge-Kings, Saint John's
and Corpus Christi to name a few-I truly felt that I had
the best commute to work that anyone could ask for. On my
way home from work, I would buy locally baked organic bread,
fruit and vegetables from the open air market held everyday
of the week. Occasionally, at the beginning of the
summer when the undergraduates were still around, I would
make a stop at King's College to attend the daily world-renowned
evensong services held daily.
I was the fourth UA student to spend a summer working
under Prof. Kevin Brindle in the University
of Cambridge's Biochemistry Department. Prof. Brindle's research focuses mainly upon
the development of new cancer imaging techniques. Prior to
my arrival, I expected to work on a follow up project of
an earlier study performed in the lab focusing on detecting
tumor response to treatment by measuring the lactate/pyruvate
ratio as detected by 13C Magnetic Resonance Imaging in tumors
following injection of hyperpolarized 13C-lactate. However,
due to changing priorities in the lab, I ended up investigating
the molecular basis for an imaging technique currently being
developed that is hypothesized to image hypoxia.
Studies performed in Malmo, Sweden by the research company
Imagnia (whose focus is the investigation of new hyperolarizable
compounds to be used in 13C MRI metabolic imaging) prior
to my arrival in Cambridge, suggested that following an injection
of hyperpolarized 13C-fumarate, the 13C-malate pool was significantly
increased in tumor tissue compared to underlying skeletal
muscle. Upon seeing this data, Prof. Brindle hypothesized
that the phenomena was due to the fact that the tumor tissue
is inherently hypoxic. Under hypoxic conditions, the transcription
factor HIF-1a (Hypoxia Inducible Factor-1a) is upregulated.
One of the consequences of HIF-1a activation is increased
expression of pyruvate dehydrogenase kinase (PDK), and consequently
pyruvate dehydrogenase phosphorylation. When PDH is phosphorylated,
the pool of available acetyl-CoA available to feed into the
Krebs cycle is diminished, consequently slowing flux through
the entire chain of reactions. Therefore, it was hypothesized
that when the 13C-fumarate was injected into the tumor tissue
it was converted to malate (as the equilibrium constant of
fumarase, the enzyme responsible for the conversion of fumarate
to malate, favors malate formation approximately four to
one). However, due to the slowing flux through the Krebs
cycle, further production of oxaloacetate from the labeled
malate was not possible- explaining the observation of an
increase in the pool of labeled malate in tumor tissue compared
to underlying skeletal muscle.
The task I was given was to test, on a molecular level,
the validity of this hypothesis by developing and optimizing
enzyme activity assays for PDH and fumarase. Luckily, there
were known assays for each of these enzymes off of which
I was able to base my work-however, as these experiments
had not been performed in the Brindle lab before optimizing
the conditions of these assays proved to be trickier than
expected. By the end of my stay I had optimized the fumarase
assay and obtained data on fumarase activity under a variety
of conditions both in tumors grown in vivo and in
vitro.
The PDH assay proved to be much trickier, and following about
a month long attempt to optimize a radiometric assay I turned
my focus to optimizing a known spectrophotometric assay of
PDH-due to some unexpected bumps in the road, I was not,
however, able to obtain PDH activity data from tumors either
in vivo or in vitro prior to my departure.
Overall, my experience in the Brindle lab was exceptional,
the other students and post-docs in the lab were all friendly
and more than willing to help me adjust to life in Cambridge-
both inside and outside of the lab. Also during my stay,
a study by the PhD student I was assigned to work with, Ferdia
Gallagher, on pH imaging using hyperpolarized bicarbonate,
made the cover of Nature-proof that I really was being exposed
to a world-class research environment.
Sarah Nelson, UBRPer in Dr.
Heddwen Brooks's lab, Physiology
Sarah's experience was funded by the MHIRT grant to UA:
MD001427