After three hours in airports,
thirteen hours in the air, two busses, one train and five
flights of stairs
carrying 100 lbs of suitcase, I had finally arrived. My
summer abroad in Copenhagen, Denmark was to be quite an
adventure and an experience that would stretch me both
as a scientist and as a person.
Having never traveled overseas before, the first couple
days were quite an adjustment. Everything around me was
unfamiliar
and I often felt like I was wearing a sign that stated in bright,
bold letters: "yes I know, I'm foreign." Cycling
is an integral part of life in Copenhagen. So, I acquired a
rusted, old bike and took to the bike lanes. I must say that
biking in the city is no easy task. It is fast paced, and one
must be ready at all times to avoid the biker who stops suddenly
in your path, quickly veer onto the sidewalk when the bike
lane is under construction, and avoid the multitudes of people
who walk directly in front of you without looking. I had a
few near death experiences, but managed to escape the summer
with only a bruise or two. The flat I rented was located about
four miles from the lab. My route to work took me down one
of the busiest streets in the city, so needless to say I was
very awake by the time I arrived at the lab!
I worked in the Laboratory for Molecular Pharmacology at the
University of Copenhagen under the supervision of Dr.
Thue Schwartz. Surprisingly, I was one of only four foreigners in
a lab numbering approximately 20 people. Everyone that I worked
with spoke English fluently (I would often joke that their
English was better than my own!); yet in spite of this I found
the language barrier to be quite an obstacle. Danish was the
primary language spoken in the lab, and very understandably
others would not switch from their native language to English
merely because
I joined them. In the beginning of my summer
I often felt like I was present physically, but not connecting
with people emotionally. This just meant I needed to be creative.
I soon realized that food was a very social thing in Denmark;
so to remedy this disconnect, I would bring in fresh baked
bread in the mornings. People would stop their work and flock
to the table, where we would all sit around and talk. The lab
also shared breakfast together on Monday mornings, and this
was a great way to foster community among the lab members.
As time went on I felt much more welcomed and accepted by my
coworkers. For the 4th of July I planned a Summer S'mores Party,
as we called it, to introduce the lab to the art of making
a proper s'more. The party became a funny topic of conversation
throughout the month of June. Everyone joined in; a few technicians
even brought in a variety of sample chocolate so that we could
decide which would be the best s'more material. The party went
very well! It was fun to be able to share a bit of American
culture with them, and so nice to feel more connected to people
in the lab. I would say that was a turning point for the summer
in terms of relating to my colleagues.
The Schwartz lab is primarily focused on characterizing seven
transmembrane G protein coupled receptors (7TM GPCRs). They
seek to gain a better understanding of how the ligands for
these receptors bind and activate 7TM receptors, and how this
leads to signal transduction. My work in the lab was two-fold.
I worked with two 7TM receptors that both belong to the ghrelin
subfamily. Ghrelin is a hormone that serves as a hunger signal
from the upper GI track to the central nervous system. The
ghrelin receptor is expressed in the hypothalamus and is involved
in regulating feeding behavior and energy homeostasis. While
mutational analysis has revealed which amino acid residues
on the ghrelin receptor are important for receptor activity,
it is not yet possible to determine the orientation of the
ligand in the binding pocket. Using methane thiosulfonate (MTS)
derivatives, we attempted to map which residues in the binding
pocket were on the water accessible surface of the protein.
We made a series of ghrelin mutants in which residues were
mutated to cysteines. We then treated the receptor with the
MTS derivative and afterward carried out competitive binding
experiments with radiolabled and unlabled ghrelin. The MTS
compound would only be able to react with the mutated Cys residue
if the residue was accessible in binding pocket. Second, we
hoped to determine the orientation of the ligand in the binding
pocket by covalently attaching an activated thiol group to
one end of the ligand. The intention was that the reactivity
of this ligand would be guided by its natural affinity for
the receptor. Once bound in the binding pocket of the receptor
the reactive thiol group would form a disulfide bridge with
the mutated Cys residue. Unfortunately, we were not able to
elucidate any information about the orientation of the ligand
because the thiol chemistry was too strong and reacted with
each of the mutated Cys residues in every area of the pocket.
My second project involved the orphan 7TM receptor GPR39. It
was proposed that GPR39 serves to protect the cells against
reactive oxygen species. I first learned the molecular biology
necessary to make a stable clone of GPR39 and a GPR39 mutant
in an inducible FLP-In T-REx cell line. Once the cells line
was functional, I carried out a series of viability assays
to test this hypothesis.
As a whole, I really enjoyed my experience in the lab. Though
it took some time to build relationships with people, by the
end, it felt like we were a small family. I would like to give
a special thanks to Dr. Thue Schwartz and all those in the
laboratory who made my experience very memorable. I would also
like to thank Carol Bender and the BRAVO! program for making
this opportunity possible.
Erin Palmer, UBRPer in Dr. Victor Hruby's laboratory, Chemistry
NOTE: Watch for Erin's datablitz as well as others given by
the Summer 2007 BRAVO! Participants