Volume16, Issue 2

February 2005

 

 

The Twang I Didn't Know I Had
Until I Left Tucson

My goal is simple. It is a complete understanding of the universe, why it is as it is and why it exists at all.
-Stephen Hawking 1988

Whatever you do, don’t be bored; this is the most exciting time we could have possibly hoped to be alive. The world is smaller than ever before, and humans daily break down the barriers of communication, distance and ideology that divide us into isolated groups. At the risk of sounding cliché, I might also point out that we are standing on the shoulders of giants. One can pick up a book of physics or calculus and read what it took Einstein, or Newton their entire lives to flesh out and establish. Human experience and progress is, fortunately for the students of life, an additive affair.

However, while “book learning” is imperative to any modern student’s arsenal, a true education is largely experiential. To suggest that any student could learn to become an original, progressive scientist by sitting in the library and pouring over the tomes of biology, chemistry and physics would be to deny the need for original thought in all of us. Like language, in science it is important to have a basic vocabulary off of which to build; but isolated studying of textbooks will only lead so far. Eventually any student who is serious about continuing their education must take the plunge and surround himself or herself with the unknown, taking their lessons from the results of their own decisions. Enter the UBRP and BRAVO! programs here at the University of Arizona.

I have just returned from a six-month period as a BRAVO! student in the lab of Dr. Kevin Brindle at the University Of Cambridge, in Cambridge, UK. Whilst in England I was studying the use of MRI as a means to non-invasively monitor gene expression in vivo. The development of a gene reporter with the ability to monitor gene expression 4-dimensionally (that is spatially, and temporally) would provide researchers and medics with a currently-unavailable tool to aid in the development of gene therapy as a treatment for disease. The use of a transporter protein whose interaction with a probe can be visualized with MRI would allow for its incorporation into current adenoviral vector therapies; this could potentially allow for the correlation of the expression of the imaging cassette to the expression of a therapeutic gene of interest. The end result of such a development would provide information about the efficacy of gene delivery and expression in living systems, which is highly variable.

The BRAVO! program gave me the opportunity to hone my laboratory skills in a world-class research laboratory. I learned molecular biological techniques such as bacterial transformations, restriction enzyme digests and plasmid purifications that allowed me to create novel plasmids for transfection of MCF-7 human breast cancer cells. I learned to use a spectrophotometer and the ratio of 260/280 nm of a DNA suspension to determine the concentration and purity of my plasmids, while agarose gels would provide me with verification that my splicing had produced the intended gene sequence in the plasmid.
When satisfied that I had created adequate stocks of the intended purified plasmid, I would culture mammalian cells for transfection. Stable transfection is the incorporation of plasmid DNA into the chromosome of a cell. The inclusion of plasmid DNA into a cell causes the constitutive expression of a protein that confers resistance to antibiotic for the purposes of selection of successful transfects. The gene of interest for imaging purposes can be expressed constitutively, or put under regulation of a specific gene promoter providing great diversity in potential applications. The transporter in question (isolated from human hepatocytes) was constitutively expressed on the surface of human cancer cells. The presence of the transporter was confirmed using a radioactive substrate for in vitro uptake experiments, while a number of paramagnetic substrates were tested in competition studies for comparison of potential contrast enhancement in MRI.

Finally, after transfecting a cell line to stably express the transgenic protein, I injected cells into the mammary fat pads of a SCID mouse to await tumor growth. The cells in question require estrogen to form tumors; so time-release estrogen pellets were inserted locally under the skin. After about a month, there were palpable tumors, sufficiently sized for the imaging experiments. A gadolinium-containing compound was injected into a tail-vein cannula and images were acquired over a few hours to follow inflow and outflow kinetics of the contrast-enhancing probe. We were hoping to find differences in pharmacokinetics between the tumor and surrounding tissue that could be used for detection of gene expression in vivo, but unfortunately, no significant differences were noted. There were general trends that suggest new directions in the development of an MRI-applicable reporter gene.

While doing this research I was treated as a graduate student in the lab. I was expected to keep myself on track without reminder and to teach myself the techniques I needed to get the necessary results. In short, I learned what it is to be a scientist and student pursuing original research.

Other than the positive contributions to my education, experience, and career as outlined above, the BRAVO! program allowed me to live and work in another country and culture. Though the US and the UK share many common cultural roots, history and differences in ideology separate us on many levels. Perhaps the most immediately noticeable difference being the age of both the city and university that collectively constitute “Cambridge, UK”. The Romans first settled Cambridge as a strategic and defendable river crossing. After the fall of the Roman Empire, the Anglo Saxons, and eventually the Normans won Cambridge. Saxon and Norman buildings survive in Cambridge, making their oldest buildings some 1000 years older than the founding of our country. The University of Cambridge was founded in 1289 by Oxford expatriates, forming a congenial rivalry between the two great schools that lasts to this day; competition and collaboration between the two universities have led to amazing intellectual progress for hundreds of years. The English are very proud of their history and their culture, much of this being rooted in the histories of Oxford and Cambridge. This pride is immediately obvious when one is in the company of British students who are simultaneously awed and honored by their surroundings. For an example of the contribution to academics and science that Cambridge has made to the world, one needs look no further than a list of Cambridge alumni. Some of the University’s famous scientist alumni include:

- William Harvey - discovered the circulation of the blood in 1628
- Isaac Newton - worked on gravitation in 1687
- Charles Darwin - described mechanism of evolution in 1859
- Ernest Rutherford - split the atom in 1903
- Crick and Watson - discovered the structure of DNA in 1953
- Professor Stephen Hawking - wrote Brief History of Time in 1988

Only through a somewhat long-term experience like BRAVO! can one truly gain the perspective of another country’s society, culture and politics. I am, consequently, a worldlier person than I would have been without this experience. This includes the perspective gained of the United States by being outside of its borders. I feel that my ability to be a responsible American citizen has matured tremendously, and I look forward to a future of developing more discourse between scientists, policymakers and the public regarding the responsible use of science and technology in our global society.

Differences in culture and values, and the hurdles that they can represent, are broken down and understood through education and interaction. Classes and texts have proven to be a first step in a comprehensive education, but experiencing the international scientific community firsthand is an amazing way to integrate a specialist education in science with exposure to worldwide social issues. It is my intention to strive for a unified global scientific partnership that tackles problems as the worldwide issues that they are. As the United Kingdom sets up the world’s first stem cell bank, a hotly contested form of research in the United States, I am reminded of the fact that the direction of science is subject to the values of the cultures that it serves. I think that in order for the scientific community to interact cohesively at an international level on such contentious issues, it will be necessary for individuals to be ready to act as scientific ambassadors. This is a term that was used to describe the expectations of me as a BRAVO! student, but I intend to carry the idea through my entire career.

I have changed my mind; I am glad our search for understanding will never come to an end, and that we’ll always have the challenge of new discovery.
-Stephen Hawking 2004

Many thanks to Carol Bender, Dr Gillies, Dr. Brindle and the HHMI for making this experience possible. Anyone interested in talking to me about my research, BRAVO! or any other aspect of my life is welcome to contact me at: days@email.arizona.edu

Samuel Day, UBRPer in Dr. Robert Gillies's lab, Biochemistry and Molecular Biophysics

 

 

 

 




Undergraduate Biology Research Program
The University of Arizona
bender@u.arizona.edu

http://ubrp.arizona.edu
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